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Can tiny microbes pack a mighty punch in the climate battle?

Ecologist Steven Allison argues for the importance of microbes in fighting climate change in a convincing and hopeful book, The Age of Microbes, says Christa Lesté-Lasserre
Photo of the Tomas Fire taken from a Santa Barbara beach.
Steven Allison envisions using non-toxic and non-pathogenic microbes in the fight against climate change
Carsten Schertzer/Getty Images

Steven D. Allison
Harvard University Press Out 3 November (US) and 27 November (UK)

It’s 2030. Heatwaves are scorching parts of the globe, while elsewhere, hailstorms or tsunamis ravage homes, cities and farmlands. Wildfires rage across continents, Arctic ice sheets dwindle, volcanoes spew left and right, and Earth cracks open along multiple fault lines. Death tolls – human, animal and plant – soar.

Amid this doom and gloom, a superhero arises from scientific labs, ready to fight our – human-made – enemy, climate change. The tiny figure can trap excess carbon from the atmosphere, or bury it underground or at the bottom of the sea, for near-eternity. It can fuel jet engines with clean energy, replace chemical fertilisers, save coral reefs from bleaching and disease, and re-engineer trees, food crops and other plants to survive, even thrive, in droughts.

2EDPD76 Cyanobacteria, phase-contrast MRI
Cyanobacteria: one of many microbes that could help fight climate change
blickwinkel/Alamy

This scenario is at the heart of Steven Allison’s book, . Allison, professor of ecology at the University of California, Irvine, maintains a balance between realism and optimism as he introduces his as yet unsung hero, the microbe.

These resilient, highly adaptable and primarily single-celled organisms could, he insists, play a far larger role in controlling or maybe even reversing climate change than we imagine. Many of these bacteria, archaea, fungi and viruses are currently dismissed as insignificant or even targeted as pathogens to be wiped out. But the microbes he and others envision using against climate change are non-toxic and non-pathogenic.

The tiny superhero can trap excess carbon from the atmosphere or bury it underground for near-eternity

They are also, unlike other proposals – installing solar mirrors in space or sucking carbon dioxide out of the air – cheap, abundant, easy to produce and totally organic. For Allison, they “offer a rare glimmer of hope”.

The Age of Microbes: A Blueprint for a Habitable Earth Book by Steven D. Allison

His book explores how microbes live and interact with each other, and with “newcomers” such as humans. He focuses especially on how scientists are uncovering the mysteries of microbes and glimpsing the extraordinary properties they could offer if we only understood enough to stop fighting them.

Allison is a captivating storyteller, taking us on colourful journeys to different regions and times. Along the way, we meet fascinating characters, like Antonie van Leeuwenhoek, who ran his own draper’s shop in the Dutch city of Delft during the 17th century, and discovered bacteria by looking at his dental plaque using microscopes and lenses he had custom-built.

Microbes also appear as characters in their own right. We encounter bacteria-eating viruses engaged in an “insidious lifestyle” known as lysogeny inside their hosts, and zooplankton, which, like cattle, graze – and “poop a lot”.

He ensures we stay focused as we navigate complex concepts and vocabulary, like “phycoerythrins”, light-harvesting and naturally fluorescent proteins in certain cyanobacteria. We also get better acquainted with biofilms – layers of slime made of carbohydrates, proteins and other sticky biomolecules. Unlike the ones we know and hate – dental plaque and toilet bowl rings – these biofilms stop important microbes from being swept away in moving water by holding on to water like a sponge. Those microbes are also protected from desiccation, while predators, such as animals or viruses in soil, find it hard to get at prey inside a biofilm. Inside, microbes can gain the carbon and nutrients they need to grow.

In passing, Allison provides us with what can seem like cool facts to use at dinner parties. But they are offered in service of the big picture. Did you know that Sequoia trees can live a thousand years or that their bark is fire-resistant? That the annual per capita energy usage in the US is 76,300 kilowatt-hours, equivalent to the energy in 2300 gallons of petrol? Or that there are nearly 3 billion billion billion oxygen-producing Prochlorococcus cyanobacteria floating around the ocean, thousands more than the stars in the known universe?

One way or another, the core message of The Age of Microbes is delivered: we can get microbes right or we can get them wrong. They are incredibly good at taking carbon in – and at letting it out again. The trick is to get them to swallow carbon and harbour it for thousands of years. That is exactly what they already do when their remains are preserved in the ground or at the bottom of the ocean as “microbial mummies”, forming clumps called necromass.

Enter the other superheroes in Allison’s book: the researchers and bioengineers studying microbes. There is a refreshing amount of overdue credit given to women scientists. What we now call the greenhouse effect was discovered by Eunice Newton Foote, who published a paper on it in 1856. A century or so later, biologist Mary Mandels pioneered cellulosic ethanol using fungal enzymes. If we ever fly on jets powered by carbon-neutral fuel, Allison says, “you’ll have microbes and Mary Mandels to thank”. He also pays due debt to the Earth wisdom of Indigenous peoples, including the Pacific Northwest Karuk, who understand the importance of mushroom networks.

Today’s labs are investigating the genes behind necromass, hoping to selectively breed for them or to produce “designer microbes”. Others study how to help plants resist climate change. Still others are slogging through complex risk-benefit analyses of commercial products touting microbial benefits. And there is key work on improving soil, depleted or destroyed by millennia of agriculture, using microbial “inoculants”.

We also have some “long-shot” solutions for climate adaptation, especially when it comes to protecting coral reefs, Allison tells me later in an email. There are scary forecasts about losing most of the world’s coral reefs by the end of this century, so “probiotic” microbes that boost heat tolerance and reduce bleaching could save reefs that millions depend on.

Overall, The Age of Microbes is a must-read as climate change bites deeper. Let’s hope that microbes do indeed prove to be an excellent addition to our armoury.

Three more great reads about biology’s frontiers

Never Home Alone: From Microbes to Millipedes, Camel Crickets, and Honeybees, the Natural History of Where We Live by Rob Dunn


by Rob Dunn

Rob Dunn explores the biology of homes, from moths in cupboards to thousands of species of insects, bacteria, fungi and plants under our noses. Kill them in the name of “cleanliness” at our peril.

We Are Eating the Earth: The Race to Fix Our Food System and Save Our Climate by Michael Grunwald


by Michael Grunwald

We might be making things worse by following bad science (and politics) in the fight to feed (maybe) 10 billion people by 2050. Michael Grunwald offers an intriguing narrative.

Intraterrestrials: Discovering the Strangest Life on Earth by Karen G. Lloyd


by Karen G. Lloyd

For more great storytelling, check out microbial biogeochemist Karen Lloyd’s journey to Earth’s deep biosphere. Its “alien” life forms could make us rethink how life is supposed to work.

Christa Lesté-Lasserre is a science journalist specialising in animal health and behaviour

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Topics: Book review / Books / Climate change