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Bacteria dug up from beneath the seabed may be 100 million years old

By Colin Barras

28 July 2020

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Ancient bacteria from mud deep beneath the sea floor have been revived

Chris Newbert / Minden / naturepl.com

Microbes that have been hibernating deep below the Pacific Ocean since the reign of聽the dinosaurs have been revived in the lab. Some may be 100聽million years old, perhaps making them the longest-lived life forms on Earth.

We already know that microbes can survive deep below our planet鈥檚 surface, even though nutrients are generally scarce. Biologists suspect that the microbes enter a minimally active mode to stay alive. But whether they can emerge unscathed has been unclear.

Now a team led by Steven D鈥橦ondt at the University of Rhode Island and Yuki Morono at the Japan Agency for Marine-Earth Science and Technology has studied about 7000 individuals of a bacterium found living in mud 75 metres beneath the聽sea floor, 5700-metres-deep in the South Pacific Ocean.

Learn more about deep time on one of our Discovery Tours:The science of deep time: A gentle walking weekend in the Brecon Beacons

鈥淲e didn鈥檛 know whether we had fully functioning cells or zombies capable of doing very few things,鈥 says D鈥橦ondt.

In the lab, the researchers gave the microbes nutrients laced with distinctive isotopes of carbon and nitrogen. Within 10聽weeks, these isotopes began showing up inside the microbes, indicating that they had begun to feed like typical bacteria.

That is remarkable considering what the bacteria have been through, says Jens Kallmeyer at the GFZ German Research Centre for Geosciences in Potsdam. He says the mud in which the bacteria were found is聽capped by layers of silicon dioxide that no microbe could penetrate.

This implies that the microbial populations have been trapped since the mud was buried under the silicon dioxide an estimated 101.5 million years聽ago. Given that this mud contains few nutrients, survival must have been challenging. 鈥淣owhere else on Earth do you find sediment as close to totally dead as this,鈥 says Kallmeyer.

The microbes may be even more astonishing than that. Although they can probably gather sufficient nutrition from聽the mud to repair cellular damage, it isn鈥檛 clear if the mud contains enough nutrients to fuel cell reproduction. 鈥淭hey may have divided since they were buried, or they may not,鈥 says Virginia Edgcomb at the Woods Hole Oceanographic Institution in Massachusetts. 鈥淚聽don鈥檛 think anyone knows.鈥

If cell division is difficult there, some of the bacterial cells might be as old as the mud itself. 鈥淚 mention this possibility in聽talks and it drives some researchers nuts,鈥 says D鈥橦ondt. Many biologists are unsettled by the idea that individual bacterial cells could survive for聽100聽million years.

There have been a handful of聽claims for even older microbes on Earth. One team聽claimed in 2000 to have resurrected microbes trapped inside 250-million-year-old salt聽crystals, but some researchers suspect that the microbes were聽seen as a result of sample contamination, which is unlikely to be the case聽in the new study.

Because the deep-sea microbes must have patched and repaired themselves countless times, it is perhaps down to philosophers to decide whether any individual cell really is 100 million years old. D鈥橦ondt believes they qualify.

鈥淚聽sometimes use the metaphor of my grandfather鈥檚 hammer,鈥 he says. 鈥淢y grandfather gave a聽hammer to my father and my聽father gave it to me. We鈥檝e replaced the head twice and the聽handle three times, but it鈥檚聽still the same hammer.鈥

Nature Communications

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